biomedical_id_resolver.js
js library for resolving biological ids to their equivalent ids in batch
Install
$ npm install biomedical-id-resolver
Usage
const resolver = ; const ids = 'entrez:1017' 'entrez:1018' 'hgnc:1177'; async { console; //=> {'entrez:1017': {...}, 'entrez:1018': {...}, 'hgnc:1177': {...}}};
Available Semantic Types & prefixes
-
Gene
- entrez
- ensembl
- umls
- name
- symbol
- hgnc
- omim
-
SequenceVariant
- dbsnp
- hgvs
-
ChemicalSubstance
- chembl
- drugbank
- name
- pubchem
- umls
- mesh
-
DiseaseOrPhenotypicFeature
- mondo
- doid
- hp
- umls
- mesh
- name
-
Pathway
- name
- reactome
- wikipathways
- kegg
- pharmgkb
- biocarta
-
MolecularActivity
- name
- go
-
CellularComponent
- go
- name
- umls
-
BiologicalProcess
- go
- name
- umls
-
AnatomicalEntity
- name
- umls
-
phenotype
- name
- umls