tcoffee-wrapper

A simple node module that wraps the functionalities of T-Coffee multiple sequence alignment program

Visit official T-Coffee web site to learn more about it. http://www.tcoffee.org/Projects/tcoffee/index.html

Install

You can install tcoffee-wrapper by running,

npm install tcoffee-wrapper

You can download pre-compiled T-Coffee binary by running,

node util/downloader.js

It will download the T-Coffee installer package to util/bin folder and launch installer for you

Usage

Align Protein Sequences using T-Coffee Default

• .alignProtein (inputFile, callback)
  callback passed (err, data)

  const tcoffee = require('tcoffee-wrapper');
  var inputFile = 'samples/example.fasta';
  
  tcoffee.alignProtein(inputFile, function(err,data){
      if(err){
          console.log(err);
      }else{
          console.log(data);
      }
  });
      

Align DNA Sequences using T-Coffee Default

• .alignDNA (inputFile, callback)
  callback passed (err, output)

Align RNA Sequences using T-Coffee Default

• .alignRNA (inputFile, callback)
  callback passed (err, output)

Align Protein Sequences using T-Coffee fast

• .alignProteinFast (inputFile, callback)
  callback passed (err, output)

Align Protein Sequences using mcoffee

• .alignMcoffee (inputFile, callback)
  callback passed (err, output)

Align DNA Sequences using procoffee

• .alignProCoffee (inputFile, callback)
  callback passed (err, output)

Align RNA Sequences using rcoffee

• .alignRcoffee (inputFile, callback)
  callback passed (err, output)