unMappedCIGARFragments
Usage
/// <reference path="./lib/lib" />import {getReads,SAMRead} from "./lib/lib"; let start = 0;let end = 10000;getReads( "someSample.sam", start, end, (read : SAMRead,unMappedFragments : Array<string> | undefined) => { //Will be called once for each read who's aligned position begins between start and end inclusive, provided as read //unMappedFragments will hold all unmapped fragments in read (from left to right) identified by evaluating read's CIGAR string against it's query sequence }).then((total : number) => { //total will be number of reads from 0-10,000 and total number of times callback was called}).catch(() => { //Failed. Likely I/O error});