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50 packages found

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@gmod/gff

read and write GFF3 data as streams

cmdcolin
published version 1.3.0, 2 years ago17 dependents licensed under $MIT
22,265

@gmod/bgzf-filehandle

read from a compressed bgzip file (with .gzi) as if it were uncompressed

cmdcolin
published version 2.0.4, 3 months ago16 dependents licensed under $MIT
15,373

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 3.2.0, 9 months ago54 dependents licensed under $MIT
12,755

@gmod/bam

Parser for BAM and BAM index (bai) files

cmdcolin
published version 5.0.7, 17 days ago15 dependents licensed under $MIT
11,859

@jbrowse/core

JBrowse 2 core libraries used by plugins

cmdcolin
published version 3.2.0, 7 days ago47 dependents licensed under $Apache-2.0
3,767

@gmod/vcf

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

cmdcolin
published version 6.0.8, 2 months ago22 dependents licensed under $MIT
3,898

@gmod/tabix

Read Tabix-indexed files, supports both .tbi and .csi indexes

cmdcolin
published version 2.0.5, 10 days ago23 dependents licensed under $MIT
4,358

@gmod/twobit

Read .2bit files in node or webpack

cmdcolin
published version 4.0.1, 4 months ago9 dependents licensed under $MIT
2,426

@jbrowse/product-core

JBrowse 2 code shared between products but not used by plugins

cmdcolin
published version 3.2.0, 7 days ago10 dependents licensed under $Apache-2.0
2,303

@gmod/bed

A BED file format parser with autoSql support

cmdcolin
published version 2.1.3, a year ago3 dependents licensed under $MIT
2,595

@gmod/nclist

Read features from JBrowse 1 format nested containment list JSON

cmdcolin
published version 2.0.0, 4 months ago21 dependents licensed under $MIT
2,441

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats

cmdcolin
published version 3.0.1, 4 months ago15 dependents licensed under $MIT
3,216

@gmod/bbi

Parser for BigWig/BigBed files

cmdcolin
published version 6.0.2, 10 days ago16 dependents licensed under $MIT
2,874

@jbrowse/embedded-core

JBrowse 2 code shared between embedded products

cmdcolin
published version 3.2.0, 7 days ago4 dependents licensed under $Apache-2.0
1,661

@gmod/cram

read CRAM files with pure Javascript

cmdcolin
published version 4.0.10, 2 months ago0 dependents licensed under $MIT
2,763

@gmod/ucsc-hub

Read and write UCSC track and assembly hub files in node or the browser

cmdcolin
published version 1.0.1, 10 days ago3 dependents licensed under $MIT
2,250

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 1.0.0, 4 months ago15 dependents licensed under $MIT
2,036

@jbrowse/sv-core

JBrowse 2 code shared between sv type code

cmdcolin
published version 3.2.0, 7 days ago3 dependents licensed under $Apache-2.0
1,260

gff-nostream

utilities to read GFF3 data

cmdcolin
published version 1.3.4, 7 months ago1 dependents licensed under $MIT
906

@jbrowse/web-core

JBrowse 2 code shared between web-app type products

cmdcolin
published version 3.2.0, 7 days ago2 dependents licensed under $Apache-2.0
760